Book Chapter

  1. Halil Bisgin, Nitin Agarwal, and Xiaowei Xu. A Study of Homophily on Social Media, Social Network Mining, Analysis and Research Trends: Techniques and Applications. Editors: I-Hsien Ting, Tzung-Pei Hong and Leon S.L. Wang. IGI Global, 2011. ( News Coverage: UALR News)

Journal Papers

  1. Halil Bisgin, Yuping Wang, Binsheng Gong, Weida Tong. An integrated analysis of gene and microRNA expression profiles in the rat liver exposed to two structurally similar drugs: amiodarone and benzbromane (to be submitted).
  2. Halil Bisgin, Yuping Wang, Binsheng Gong, Weida Tong. Evaluation of bioinformatics choices for next-generation sequencing analysis of microRNAs (to be submitted)
  3. Harsh Dweep, Yuji Morikawa, Binsheng Gong, Jian Yan, Tao Chen, Zhichao Liu, Christina Castro, Halil Bisgin, Wen Zou, Huixiao Hong, Tieliu Shi, Ping Gong, Takeki Uehara, Yuping Wang, Weida Tong. Mechanistic Roles of miRNAs in Hepatocarcinogenesis at Rats Treated with a Non Genotoxic Carcinogen (to be submitted)
  4. Su Inn Park, Joshua Xu, Halil Bisgin, Hongjian Ding, Howard Semey. Species Identification of Food Contaminating Beetles by Recognizing Patterns in Microscopic Images of Elytra Fragments, PLoS ONE, 11:1-22, 2016
  5. Halil Bisgin, Zhichao Liu, Reagan Kelly, Hong Fang, Xiaowei Xu, Weida Tong. A phenome-guided drug repositioning through a latent model, BMC Bioinformatics, 15:267, 2014.
  6. Minjun Chen, Halil Bisgin, Lillian J. Tong, Huixiao Hong, Hong Fang, Weida Tong. Toward Predictive Models for Drug-induced Liver Injury in Humans: Are We There Yet?, Biomarkers in Medicine, 8(2):201-213, 2014.
  7. Halil Bisgin, Minjun Chen, Yuping Wang, Reagan Kelly, Hong Fang, Xiaowei Xu, Weida Tong. A Systems Approach for Analysis of High Content Screening Assay Data with Topic Modeling, BMC Bioinformatics, 14(S11), 2013.
  8. Halil Bisgin, Zhichao Liu, Reagan Kelly, Hong Fang, Xiaowei Xu, Weida Tong. Investigating drug repositioning opportunities in FDA drug labels through topic modeling, BMC Bioinformatics, 13(S6), 2012.
  9. Halil Bisgin, Zhichao Liu, Hong Fang, Xiaowei Xu, Weida Tong. Mining FDA Drug Labels using unsupervised learning technique -Topic Modeling, BMC Bioinformatics, 12(S11), 2011. (2011 Impact Factor: 3.03)
  10. Halil Bisgin, Orhan Kilinc, Ahmet Ugur, Xiaowei Xu, Volkan Tuzcu. Diagnosis of Long QT Syndrome via Support Vector Machine Classification, Journal of Biomedical Science and Engineering, 4(4): 264-271, April, 2011.
  11. Halil Bisgin, Nitin Agarwal, and Xiaowei Xu. A Study of Homophily on Social Media, WorldWide Web, 15(2):213-232, 2012. (top 4th journal in Computer Science that focuses on Web Science Research)

Conference Proceedings

  1. M. Venkata Swamy, Stephen Wallace, Halil Bisgin, Nitin Agarwal, Xiaowei Xu, and Hemant Joshi. NMiner: A System for Finding Related Entities by Mining a Bimodal Network. 8th Asia Information Retrieval Societies Conference (AIRS 2012). December 17-19, 2012, Tianjin, China.
  2. Fatih Sen, Rolf T. Wigand, Nitin Agarwal, Debanjan Mahata, and Halil Bisgin. Identifying focal patterns in social networks. 4th International Conference on Computational Aspects of Social Networks (CASoN 2012). November 21-23, 2012, Sao Carlos, Brazil.
  3. M. Venkata Swamy, Halil Bisgin, Stephen Wallace, Nitin Agarwal, Xiaowei Xu, and Hemant Joshi. UALR at TREC 2011 Entity Track. 20th Text REtrieval Conference (TREC 2011). November 15-18, 2011, Gaithersburg, Maryland.
  4. Halil Bisgin, Nitin Agarwal, and Xiaowei Xu. Does Similarity Breed Connection? – An Investigation in BlogCatalog and Last.fm Communities. 2nd International Symposium on Social Computing Applications (SCA-10) held in conjunction with the 2nd IEEE International Conference on Social Computing (SocialCom10). August 20-22, 2010, Minneapolis, MN.
  5. Halil Bisgin, Nitin Agarwal, and Xiaowei Xu. Investigating Homophily in Online Social Networks. The 10th IEEE/WIC/ACM International Conference on Web Intelligence (WI10). August 31 – September 3, 2010, Toronto, Canada.
  6. Halil Bisgin, Nitin Agarwal, and Xiaowei Xu. Does Similarity breed Connection? – An Investigation in BlogCatalog and Last.fm Communities. The 4th ACM Workshop on Social
  7. Network Mining and Analysis (SNAKDD) held in conjunction with the 16th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD 2010). July 25, 2010, Washington DC, USA.
  8. Xiaowei Xu, Mutlu Mete, Halil Bisgin, Kemal Aydin, Nitin Agarwal, and Thomas A.J. Schweiger. Finding Community Leaders in Social Networks. The 4th ACM Workshop on
  9. Social Network Mining and Analysis (SNAKDD) held in conjunction with the 16th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD 2010). July 25, 2010, Washington DC, USA.

Posters/Talks

  1. Monisha Puttaraju and Halil Bisgin. A probabilistic framework for identifying drug-drug interactions and primary suspect drugs for multi-drug treatment settings. 13th Annual Conference of the MidSouth Computational Biology and Bioinformatics Society  Mar 3-5, 2016. Memphis,TN
  2.  Halil Bisgin , Joshua Xu, Binsheng Gong, Zhichao Liu, Hong Fang, Leming Shi, Weida Tong. Exploring Rat RNA-Seq transcriptomic BodyMap through Topic Modeling. 10th Annual Conference of the MidSouth Computational Biology and Bioinformatics Society , March 6-18, 2014 (MCBIOS 2014), Stillwater, Oklahoma
  3. Halil Bisgin , Zhichao Liu,Reagan Kelly, Hong Fang, Xiaowei Xu, Weida Tong. A phenome-guided drug repositioning through a latent model. Conference on Semantics in Healthcare and Life Sciences , Feb 26-28, 2014 (CSHALS 2014), Boston, Massachusetts
  4. Halil Bisgin , Zhichao Liu, Hong Fang, Weida Tong, Xiaowei Xu. Mining FDA Drug Labels using unsupervised learning technique -Topic Modeling. 8th Annual Conference of the Mid-South Computational Biology and Bioinformatics Society , April 1-2, 2011 (MCBIOS 2011), College Station, Texas
  5. Halil Bisgin , Orhan Kilinc, Ahmet Ugur, Xiaowei Xu, Volkan Tuzcu. Diagnosis of Long QT Syndrome via Support Vector Machine Classication. 7th Annual Conference of the MidSouth Computational Biology and Bioinformatics Society , February 19-20, 2010 (MCBIOS 2010), Jonesboro, Arkansas
  6. Halil Bisgin , H. Nuzhet Dalfes. Parallel Clustering Algorithms with Application to Climatology. EGU General Assembly , 2008, Vienna, Austria.